PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021561m
Common NameCARUB_v10021561mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SRS
Protein Properties Length: 335aa    MW: 37103.4 Da    PI: 7.1124
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021561mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702227.52.5e-701042722154
           DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.............kskk 82 
                      r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++++s++++++kr re              +   
  Carubv10021561m 104 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSTSSRETQNTKRLREAsggdnnnnddkdhSGGG 197
                      7899*********************************************************999995555555555555555555555447788 PP

           DUF702  83 qsalsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                       sal++t++++++s++ le+s+ lP+ev+s+avfrcvrvss+++  +++e+aYqtav+igGhvfkGiLydqG+++
  Carubv10021561m 198 GSALANTRVVNTNSNSGLEVSQhLPPEVNSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 272
                      899*************9998776*******************98535567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.4E-64107271IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.7E-28109151IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.4E-26220270IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAGFFYLGGR DNNSKQDHHQ DKNYLYLYKD EIYNNNKGFE IWPPQYFQQQ EQPQQQQHAS  60
APANFYSFGM VPSGSSSNNN NSRSRSLYFN VVSDHEPGGF TVTRQGGMNC QDCGNQAKKD  120
CPHMRCRTCC KSRGFHCQTH VKSTWVPAAK RRERLAQLAS LQHHSTSSRE TQNTKRLREA  180
SGGDNNNNDD KDHSGGGGSA LANTRVVNTN SNSGLEVSQH LPPEVNSPAV FRCVRVSSIE  240
EDEDDQEYAY QTAVNIGGHV FKGILYDQGP DQDHHHHHLN LLASTATTTN VEETATKTVA  300
GNNSNGLMLD PSSLYPAQLN SFIAGTSFFT PPRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8006200.0AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBankAY9247300.0AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301163.10.0hypothetical protein CARUB_v10021561mg
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLR0GEL10.0R0GEL1_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.2__1830__AT1G75520.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-165SHI-related sequence 5